Gene name: APL6
Reference locus (S288C): YGR261C
Gene biotype: protein_coding
Description: Beta3-like subunit of the yeast AP-3 complex; functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; exists in both cytosolic and peripherally associated membrane-bound pools
Top 10 interactors (score): APM3 (0.999); APL5 (0.999); APS3 (0.999); ARF1 (0.972); APL4 (0.968); ARF2 (0.964); APM2 (0.948); APM4 (0.946); APL1 (0.939); APM1 (0.915); APL3 (0.877); APL2 (0.875); APS1 (0.849); APS2 (0.81); VPS45 (0.806); VAM3 (0.766); VPS41 (0.735); SYS1 (0.72); SFT2 (0.703); RET2 (0.7)
Homologues (species, bitscore): AP3B1 (Homo sapiens, 256.1); Ap3b2 (Mus musculus, 256.9); AP3B2 (Danio rerio, 258.5); ap3b2 (Xenopus tropicalis, 251.5); Rb (Drosophila melanogaster, 223.8); apb-3 (Caenorhabditis elegans, 208.4); PAT2 (Arabidopsis thaliana, 180.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:979762-982191:- | gene-YGR261C_AKU4011 | rna-NM_001181390.3_AKU4011 | cds-NP_011777.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:259759-262188:- | gene-YGR261C_BG1 | rna-NM_001181390.3_BG1 | cds-NP_011777.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:988272-990701:- | gene-YGR261C_Bruggeman | rna-NM_001181390.3_Bruggeman | cds-NP_011777.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:987465-989894:- | gene-YGR261C_CAT1 | rna-NM_001181390.3_CAT1 | cds-NP_011777.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:982632-985061:- | gene-YGR261C_CBS1585 | rna-NM_001181390.3_CBS1585 | cds-NP_011777.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:986252-988681:- | gene-YGR261C_CBS436 | rna-NM_001181390.3_CBS436 | cds-NP_011777.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:973522-975951:- | gene-YGR261C_CBS6412 | rna-NM_001181390.3_CBS6412 | cds-NP_011777.3_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:979577-982006:- | gene-YGR261C_CBS6413 | rna-NM_001181390.3_CBS6413 | cds-NP_011777.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:1013993-1016422:- | gene-YGR261C_CENPK1137D | rna-NM_001181390.3_CENPK1137D | cds-NP_011777.3_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:967602-970031:- | gene-YGR261C_EthanolRed | rna-NM_001181390.3_EthanolRed | cds-NP_011777.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:972408-974837:- | gene-YGR261C_FaliES1 | rna-NM_001181390.3_FaliES1 | cds-NP_011777.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:55473-57902:+ | gene-YGR261C_JAY291 | rna-NM_001181390.3_JAY291 | cds-NP_011777.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:986013-988442:- | gene-YGR261C_MUCL30387 | rna-NM_001181390.3_MUCL30387 | cds-NP_011777.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:984145-986574:- | gene-YGR261C_MUCL30388 | rna-NM_001181390.3_MUCL30388 | cds-NP_011777.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:977738-980167:- | gene-YGR261C_MUCL39482 | rna-NM_001181390.3_MUCL39482 | cds-NP_011777.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:995600-998029:- | gene-YGR261C_MUCL42920 | rna-NM_001181390.3_MUCL42920 | cds-NP_011777.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:1014321-1016750:- | gene-YGR261C_NCIM3186 | rna-NM_001181390.3_NCIM3186 | cds-NP_011777.3_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:973367-975796:- | gene-YGR261C_NCYC1407 | rna-NM_001181390.3_NCYC1407 | cds-NP_011777.3_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:998552-1000981:- | gene-YGR261C_PE2H3 | rna-NM_001181390.3_PE2H3 | cds-NP_011777.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:1003391-1005820:- | gene-YGR261C_PE2H4 | rna-NM_001181390.3_PE2H4 | cds-NP_011777.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:1014321-1016750:- | gene-YGR261C_S288C | rna-NM_001181390.3_S288C | cds-NP_011777.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000063.1:12543-14972:- | gene-YGR261C_SA1 | rna-NM_001181390.3_SA1 | cds-NP_011777.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:992928-995357:- | gene-YGR261C_ThermosaccDry | rna-NM_001181390.3_ThermosaccDry | cds-NP_011777.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1098709-1101138:- | gene-YGR261C_VR1 | rna-NM_001181390.3_VR1 | cds-NP_011777.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:294341-296770:- | gene-YGR261C_ZTW1 | rna-NM_001181390.3_ZTW1 | cds-NP_011777.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:984958-987397:- | gene-YGR261C_Sparadoxus | rna-NM_001181390.3_Sparadoxus | cds-NP_011777.3_Sparadoxus | 88.9 | 99.1 | Verified | 1 | 1 | 0 | False | False | False | True | False |