Gene name: APL4
Reference locus (S288C): YPR029C
Gene biotype: protein_coding
Description: AP-1 complex subunit gamma-1; Gamma-adaptin; large subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; involved in vesicle mediated transport
Top 10 interactors (score): APL2 (0.999); APM1 (0.999); APM2 (0.999); APS1 (0.999); CHC1 (0.998); LAA1 (0.996); APL1 (0.994); MRL1 (0.987); ENT3 (0.987); ENT5 (0.986); APL3 (0.983); APM4 (0.974); APS3 (0.968); APL6 (0.968); GGA2 (0.959); ARF1 (0.942); APM3 (0.932); SEC21 (0.932); APS2 (0.923); GGA1 (0.915)
Homologues (species, bitscore): AP1G1 (Homo sapiens, 339.7); Ap1g1 (Mus musculus, 340.9); ap1g1 (Danio rerio, 341.3); ap1g1 (Xenopus tropicalis, 287.3); AP-1gamma (Drosophila melanogaster, 335.1); apg-1 (Caenorhabditis elegans, 332.4); GAMMA-ADR (Arabidopsis thaliana, 344.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:596096-598594:- | gene-YPR029C_AKU4011 | rna-NM_001184126.1_AKU4011 | cds-NP_015354.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:299039-301537:+ | gene-YPR029C_BG1 | rna-NM_001184126.1_BG1 | cds-NP_015354.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:673757-676255:- | gene-YPR029C_Bruggeman | rna-NM_001184126.1_Bruggeman | cds-NP_015354.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:716757-719255:- | gene-YPR029C_CAT1 | rna-NM_001184126.1_CAT1 | cds-NP_015354.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:599780-602278:- | gene-YPR029C_CBS1585 | rna-NM_001184126.1_CBS1585 | cds-NP_015354.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:614177-616675:- | gene-YPR029C_CBS436 | rna-NM_001184126.1_CBS436 | cds-NP_015354.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:603528-606026:- | gene-YPR029C_CBS6412 | rna-NM_001184126.1_CBS6412 | cds-NP_015354.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:596727-599225:- | gene-YPR029C_CBS6413 | rna-NM_001184126.1_CBS6413 | cds-NP_015354.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:624446-626944:- | gene-YPR029C_CENPK1137D | rna-NM_001184126.1_CENPK1137D | cds-NP_015354.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:594026-596524:- | gene-YPR029C_EthanolRed | rna-NM_001184126.1_EthanolRed | cds-NP_015354.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:601829-604327:- | gene-YPR029C_FaliES1 | rna-NM_001184126.1_FaliES1 | cds-NP_015354.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000116.1:23558-26056:+ | gene-YPR029C_JAY291 | rna-NM_001184126.1_JAY291 | cds-NP_015354.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:614970-617468:- | gene-YPR029C_MUCL30387 | rna-NM_001184126.1_MUCL30387 | cds-NP_015354.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:613650-616148:- | gene-YPR029C_MUCL30388 | rna-NM_001184126.1_MUCL30388 | cds-NP_015354.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:593037-595535:- | gene-YPR029C_MUCL39482 | rna-NM_001184126.1_MUCL39482 | cds-NP_015354.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:655844-658342:- | gene-YPR029C_MUCL42920 | rna-NM_001184126.1_MUCL42920 | cds-NP_015354.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:624452-626950:- | gene-YPR029C_NCIM3186 | rna-NM_001184126.1_NCIM3186 | cds-NP_015354.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:600968-603466:- | gene-YPR029C_NCYC1407 | rna-NM_001184126.1_NCYC1407 | cds-NP_015354.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:607229-609727:- | gene-YPR029C_PE2H3 | rna-NM_001184126.1_PE2H3 | cds-NP_015354.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:606877-609375:- | gene-YPR029C_PE2H4 | rna-NM_001184126.1_PE2H4 | cds-NP_015354.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:624469-626967:- | gene-YPR029C_S288C | rna-NM_001184126.1_S288C | cds-NP_015354.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:73808-76306:+ | gene-YPR029C_SA1 | rna-NM_001184126.1_SA1 | cds-NP_015354.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:601629-604127:- | gene-YPR029C_ThermosaccDry | rna-NM_001184126.1_ThermosaccDry | cds-NP_015354.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:617890-620388:- | gene-YPR029C_VR1 | rna-NM_001184126.1_VR1 | cds-NP_015354.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:600950-603448:- | gene-YPR029C_ZTW1 | rna-NM_001184126.1_ZTW1 | cds-NP_015354.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:601768-604260:- | gene-YPR029C_Sparadoxus | rna-NM_001184126.1_Sparadoxus | cds-NP_015354.1_Sparadoxus | 89.1 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |