Gene name: APL1
Reference locus (S288C): YJR005W
Gene biotype: protein_coding
Description: Beta-adaptin; large subunit of the clathrin associated protein complex (AP-2); involved in vesicle mediated transport; similar to mammalian beta-chain of the clathrin associated protein complex
Top 10 interactors (score): APL3 (0.999); APM4 (0.999); APS2 (0.999); CHC1 (0.996); APL4 (0.994); APM1 (0.971); APS1 (0.951); CLC1 (0.946); ENT3 (0.94); APL6 (0.939); APM3 (0.936); ENT5 (0.934); EDE1 (0.925); APL5 (0.913); APM2 (0.903); HOF1 (0.836); YAP1802 (0.825); YAP1801 (0.825); APS3 (0.81); APL2 (0.8)
Homologues (species, bitscore): AP1B1 (Homo sapiens, 296.2); Ap1b1 (Mus musculus, 293.9); ap1b1 (Danio rerio, 298.1); ap2b1 (Xenopus tropicalis, 290.0); AP-1-2beta (Drosophila melanogaster, 286.6); apb-1 (Caenorhabditis elegans, 287.3); AT4G11380 (Arabidopsis thaliana, 293.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:429092-431194:+ | gene-YJR005W_AKU4011 | rna-NM_001181662.3_AKU4011 | cds-NP_012538.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:181533-183635:- | gene-YJR005W_BG1 | rna-NM_001181662.3_BG1 | cds-NP_012538.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:443189-445291:+ | gene-YJR005W_Bruggeman | rna-NM_001181662.3_Bruggeman | cds-NP_012538.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:447130-449232:+ | gene-YJR005W_CAT1 | rna-NM_001181662.3_CAT1 | cds-NP_012538.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:440677-442779:+ | gene-YJR005W_CBS1585 | rna-NM_001181662.3_CBS1585 | cds-NP_012538.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:459656-461758:+ | gene-YJR005W_CBS436 | rna-NM_001181662.3_CBS436 | cds-NP_012538.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:428906-431008:+ | gene-YJR005W_CBS6412 | rna-NM_001181662.3_CBS6412 | cds-NP_012538.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:431133-433235:+ | gene-YJR005W_CBS6413 | rna-NM_001181662.3_CBS6413 | cds-NP_012538.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:428348-430450:+ | gene-YJR005W_CENPK1137D | rna-NM_001181662.3_CENPK1137D | cds-NP_012538.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:434064-436166:+ | gene-YJR005W_EthanolRed | rna-NM_001181662.3_EthanolRed | cds-NP_012538.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:445205-447307:+ | gene-YJR005W_FaliES1 | rna-NM_001181662.3_FaliES1 | cds-NP_012538.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000321.1:5935-8037:- | gene-YJR005W_JAY291 | rna-NM_001181662.3_JAY291 | cds-NP_012538.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:443516-445618:+ | gene-YJR005W_MUCL30387 | rna-NM_001181662.3_MUCL30387 | cds-NP_012538.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:440038-442140:+ | gene-YJR005W_MUCL30388 | rna-NM_001181662.3_MUCL30388 | cds-NP_012538.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:434011-436113:+ | gene-YJR005W_MUCL39482 | rna-NM_001181662.3_MUCL39482 | cds-NP_012538.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:439451-441553:+ | gene-YJR005W_MUCL42920 | rna-NM_001181662.3_MUCL42920 | cds-NP_012538.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:445902-448004:+ | gene-YJR005W_NCIM3186 | rna-NM_001181662.3_NCIM3186 | cds-NP_012538.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:431905-434007:+ | gene-YJR005W_NCYC1407 | rna-NM_001181662.3_NCYC1407 | cds-NP_012538.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:450314-452416:+ | gene-YJR005W_PE2H3 | rna-NM_001181662.3_PE2H3 | cds-NP_012538.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:444008-446110:+ | gene-YJR005W_PE2H4 | rna-NM_001181662.3_PE2H4 | cds-NP_012538.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:445923-448025:+ | gene-YJR005W_S288C | rna-NM_001181662.3_S288C | cds-NP_012538.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:241932-244034:+ | gene-YJR005W_SA1 | rna-NM_001181662.3_SA1 | cds-NP_012538.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:438864-440966:+ | gene-YJR005W_ThermosaccDry | rna-NM_001181662.3_ThermosaccDry | cds-NP_012538.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:441233-443335:+ | gene-YJR005W_VR1 | rna-NM_001181662.3_VR1 | cds-NP_012538.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:418867-420969:+ | gene-YJR005W_ZTW1 | rna-NM_001181662.3_ZTW1 | cds-NP_012538.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:443729-445831:+ | gene-YJR005W_Sparadoxus | rna-NM_001181662.3_Sparadoxus | cds-NP_012538.3_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |