Gene name: AMD1
Reference locus (S288C): YML035C
Gene biotype: protein_coding
Description: AMP deaminase; tetrameric enzyme that catalyzes the deamination of AMP to form IMP and ammonia; thought to be involved in regulation of intracellular purine (adenine, guanine, and inosine) nucleotide pools
Top 10 interactors (score): ADE13 (0.996); ADE12 (0.991); ADO1 (0.991); ADK1 (0.991); ISN1 (0.985); HPT1 (0.979); AAH1 (0.97); IMD3 (0.96); ADE16 (0.959); IMD4 (0.956); APT2 (0.955); APT1 (0.955); ADE17 (0.952); IMD2 (0.95); HAM1 (0.933); ADK2 (0.93); YND1 (0.918); PDE1 (0.903); PDE2 (0.9); FAP7 (0.9)
Homologues (species, bitscore): AMPD2 (Homo sapiens, 677.2); Ampd2 (Mus musculus, 679.1); ampd2 (Danio rerio, 677.9); ampd2 (Xenopus tropicalis, 608.6); AMPdeam (Drosophila melanogaster, 669.1); C34F11.3 (Caenorhabditis elegans, 642.5); FAC1 (Arabidopsis thaliana, 657.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:256040-258472:- | gene-YML035C_AKU4011 | rna-NM_001182392.1_AKU4011 | cds-NP_013677.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:284416-286848:+ | gene-YML035C_BG1 | rna-NM_001182392.1_BG1 | cds-NP_013677.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:195946-198378:- | gene-YML035C_Bruggeman | rna-NM_001182392.1_Bruggeman | cds-NP_013677.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:198495-200927:- | gene-YML035C_CAT1 | rna-NM_001182392.1_CAT1 | cds-NP_013677.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:188995-191427:- | gene-YML035C_CBS1585 | rna-NM_001182392.1_CBS1585 | cds-NP_013677.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:194510-196942:- | gene-YML035C_CBS436 | rna-NM_001182392.1_CBS436 | cds-NP_013677.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:302728-305160:- | gene-YML035C_CBS6412 | rna-NM_001182392.1_CBS6412 | cds-NP_013677.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:188247-190679:- | gene-YML035C_CBS6413 | rna-NM_001182392.1_CBS6413 | cds-NP_013677.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:200951-203383:- | gene-YML035C_CENPK1137D | rna-NM_001182392.1_CENPK1137D | cds-NP_013677.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:188995-191427:- | gene-YML035C_EthanolRed | rna-NM_001182392.1_EthanolRed | cds-NP_013677.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:191959-194391:- | gene-YML035C_FaliES1 | rna-NM_001182392.1_FaliES1 | cds-NP_013677.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000237.1:17742-20174:+ | gene-YML035C_JAY291 | rna-NM_001182392.1_JAY291 | cds-NP_013677.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:193681-196113:- | gene-YML035C_MUCL30387 | rna-NM_001182392.1_MUCL30387 | cds-NP_013677.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:197692-200124:- | gene-YML035C_MUCL30388 | rna-NM_001182392.1_MUCL30388 | cds-NP_013677.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:189275-191707:- | gene-YML035C_MUCL39482 | rna-NM_001182392.1_MUCL39482 | cds-NP_013677.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:194783-197215:- | gene-YML035C_MUCL42920 | rna-NM_001182392.1_MUCL42920 | cds-NP_013677.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:206382-208814:- | gene-YML035C_NCIM3186 | rna-NM_001182392.1_NCIM3186 | cds-NP_013677.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:189218-191650:- | gene-YML035C_NCYC1407 | rna-NM_001182392.1_NCYC1407 | cds-NP_013677.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:195102-197534:- | gene-YML035C_PE2H3 | rna-NM_001182392.1_PE2H3 | cds-NP_013677.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:201197-203629:- | gene-YML035C_PE2H4 | rna-NM_001182392.1_PE2H4 | cds-NP_013677.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:206428-208860:- | gene-YML035C_S288C | rna-NM_001182392.1_S288C | cds-NP_013677.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:29988-32420:+ | gene-YML035C_SA1 | rna-NM_001182392.1_SA1 | cds-NP_013677.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:189032-191464:- | gene-YML035C_ThermosaccDry | rna-NM_001182392.1_ThermosaccDry | cds-NP_013677.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:193043-195475:- | gene-YML035C_VR1 | rna-NM_001182392.1_VR1 | cds-NP_013677.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:168109-170541:- | gene-YML035C_ZTW1 | rna-NM_001182392.1_ZTW1 | cds-NP_013677.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:199847-202279:- | gene-YML035C_Sparadoxus | rna-NM_001182392.1_Sparadoxus | cds-NP_013677.1_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |