Gene name: AIR1
Reference locus (S288C): YIL079C
Gene biotype: protein_coding
Description: Zinc knuckle protein; involved in nuclear RNA processing and degradation as a component of the TRAMP complex; stimulates the poly(A) polymerase activity of Pap2p in vitro; AIR1 has a paralog, AIR2, that arose from the whole genome duplication; although Air1p and Air2p are homologous TRAMP subunits, they have nonredundant roles in regulation of substrate specificity of the exosome
Top 10 interactors (score): PAP2 (0.999); MTR4 (0.999); TRF5 (0.999); AIR2 (0.988); RRP6 (0.983); PAP1 (0.973); NAB3 (0.97); DIS3 (0.959); DHR2 (0.954); SEN1 (0.917); SKI2 (0.868); RRP40 (0.867); RRP45 (0.862); CSL4 (0.856); MTR3 (0.856); XRN1 (0.854); RRP46 (0.836); LRP1 (0.831); SKI6 (0.828); RAT1 (0.796)
Homologues (species, bitscore): ZCCHC7 (Homo sapiens, 62.0); Zcchc7 (Mus musculus, 70.1); zcchc7 (Danio rerio, 74.7); zcchc7 (Xenopus tropicalis, 76.6); CG9715 (Drosophila melanogaster, 60.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:207591-208673:- | gene-YIL079C_AKU4011 | rna-NM_001179429.1_AKU4011 | cds-NP_012186.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:69526-70608:- | gene-YIL079C_BG1 | rna-NM_001179429.1_BG1 | cds-NP_012186.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:213007-214089:- | gene-YIL079C_Bruggeman | rna-NM_001179429.1_Bruggeman | cds-NP_012186.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:203290-204372:- | gene-YIL079C_CAT1 | rna-NM_001179429.1_CAT1 | cds-NP_012186.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:207162-208244:- | gene-YIL079C_CBS1585 | rna-NM_001179429.1_CBS1585 | cds-NP_012186.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:203217-204299:- | gene-YIL079C_CBS436 | rna-NM_001179429.1_CBS436 | cds-NP_012186.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:204539-205621:- | gene-YIL079C_CBS6412 | rna-NM_001179429.1_CBS6412 | cds-NP_012186.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:199082-200164:- | gene-YIL079C_CBS6413 | rna-NM_001179429.1_CBS6413 | cds-NP_012186.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:202630-203712:- | gene-YIL079C_CENPK1137D | rna-NM_001179429.1_CENPK1137D | cds-NP_012186.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:191886-192968:- | gene-YIL079C_EthanolRed | rna-NM_001179429.1_EthanolRed | cds-NP_012186.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:208794-209876:- | gene-YIL079C_FaliES1 | rna-NM_001179429.1_FaliES1 | cds-NP_012186.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000025.1:19629-20711:+ | gene-YIL079C_JAY291 | rna-NM_001179429.1_JAY291 | cds-NP_012186.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:211223-212305:- | gene-YIL079C_MUCL30387 | rna-NM_001179429.1_MUCL30387 | cds-NP_012186.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:207832-208914:- | gene-YIL079C_MUCL30388 | rna-NM_001179429.1_MUCL30388 | cds-NP_012186.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:208009-209091:- | gene-YIL079C_MUCL39482 | rna-NM_001179429.1_MUCL39482 | cds-NP_012186.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:211370-212452:- | gene-YIL079C_MUCL42920 | rna-NM_001179429.1_MUCL42920 | cds-NP_012186.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:210923-212005:- | gene-YIL079C_NCIM3186 | rna-NM_001179429.1_NCIM3186 | cds-NP_012186.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:212286-213368:- | gene-YIL079C_NCYC1407 | rna-NM_001179429.1_NCYC1407 | cds-NP_012186.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:206272-207354:- | gene-YIL079C_PE2H3 | rna-NM_001179429.1_PE2H3 | cds-NP_012186.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:200987-202069:- | gene-YIL079C_PE2H4 | rna-NM_001179429.1_PE2H4 | cds-NP_012186.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:210923-212005:- | gene-YIL079C_S288C | rna-NM_001179429.1_S288C | cds-NP_012186.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000031.1:113826-114908:+ | gene-YIL079C_SA1 | rna-NM_001179429.1_SA1 | cds-NP_012186.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:207457-208539:- | gene-YIL079C_ThermosaccDry | rna-NM_001179429.1_ThermosaccDry | cds-NP_012186.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:205146-206228:- | gene-YIL079C_VR1 | rna-NM_001179429.1_VR1 | cds-NP_012186.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:181721-182803:- | gene-YIL079C_ZTW1 | rna-NM_001179429.1_ZTW1 | cds-NP_012186.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:205780-206862:- | gene-YIL079C_Sparadoxus | rna-NM_001179429.1_Sparadoxus | cds-NP_012186.1_Sparadoxus | 88.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |