AI4 (Q0065)

Gene profile

Gene name: AI4
Reference locus (S288C): Q0065
Gene biotype: protein_coding

Description: Intron-encoded DNA endonuclease aI4; Endonuclease I-SceII; encoded by a mobile group I intron within the mitochondrial COX1 gene; intron is normally spliced by the BI4p maturase but AI4p can mutate to acquire the same maturase activity

Top 10 interactors (score): COX2 (0.997); COX3 (0.993); ATP6 (0.987); COX1 (0.943); AI5_ALPHA (0.943); COB (0.935); COX6 (0.92); COX12 (0.869); RIP1 (0.868); OLI1 (0.854); QCR2 (0.82); COX10 (0.8); ZIM17 (0.788); SCEI (0.784); COX4 (0.78); PET309 (0.765); MAS1 (0.76); ATP8 (0.76); MTF2 (0.748); CYT1 (0.745)

Homologues (species, bitscore): MT-CO1 (Homo sapiens, 321.6); mt-Co1 (Mus musculus, 325.9); COX1 (Danio rerio, 319.7); COX1 (Xenopus tropicalis, 324.7); mt:CoI (Drosophila melanogaster, 327.4); COX1 (Caenorhabditis elegans, 295.0); COX1 (Arabidopsis thaliana, 348.6)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia MBVO01000055.1:13277-16474:+ gene-Q0065_AKU4011 rna-Q0065_AKU4011 cds-NP_009307.2_AKU4011 68.3 87.7 Unannotated 1 1 0 Unknown False False False False
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000033.1:14328-18446:+ gene-Q0065_Bruggeman rna-Q0065_Bruggeman cds-NP_009307.2_Bruggeman 99.1 99.8 Unannotated 1 1 0 Unknown False False False False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000029.1:1-1123:+ gene-Q0065_CAT1 rna-Q0065_CAT1 cds-NP_009307.2_CAT1 64.9 66.9 Unannotated 1 1 0 Unknown False False False False
CBS1585 GCA_001738375.1 Sake Asia MBVS01000067.1:11521-14717:+ gene-Q0065_CBS1585 rna-Q0065_CBS1585 cds-NP_009307.2_CBS1585 68.2 87.7 Unannotated 1 1 0 Unknown False False False False
CBS436 GCA_001738355.1 Sake Asia MBVR01000053.1:13613-19026:+ gene-Q0065_CBS436 rna-Q0065_CBS436 cds-NP_009307.2_CBS436 68.0 79.9 Unannotated 1 1 0 Unknown False False False False
CBS6412 GCA_001738345.1 Sake Asia MBVQ01000062.1:7219-10552:+ gene-Q0065_CBS6412 rna-Q0065_CBS6412 cds-NP_009307.2_CBS6412 68.1 87.7 Unannotated 1 1 0 Unknown False False False False
CBS6413 GCA_001738265.1 Sake Asia MBVP01000101.1:38864-44416:+ gene-Q0065_CBS6413 rna-Q0065_CBS6413 cds-NP_009307.2_CBS6413 69.3 81.2 Unannotated 1 1 0 Unknown False False False False
EthanolRed GCA_001738615.1 Bioethanol Asia MBWB01000074.1:7651-13452:+ gene-Q0065_EthanolRed rna-Q0065_EthanolRed cds-NP_009307.2_EthanolRed 66.4 86.8 Unannotated 1 1 0 Unknown False False False False
FaliES1 GCA_001738715.1 Bioethanol Asia MBWD01000016.1:13890-19691:+ gene-Q0065_FaliES1 rna-Q0065_FaliES1 cds-NP_009307.2_FaliES1 66.4 86.8 Unannotated 1 1 0 Unknown False False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000029.1:1508-7141:- gene-Q0065_JAY291 rna-Q0065_JAY291 cds-NP_009307.2_JAY291 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000168.1:11838-15956:+ gene-Q0065_MUCL30387 rna-Q0065_MUCL30387 cds-NP_009307.2_MUCL30387 99.1 99.8 Unannotated 1 1 0 Unknown False False False False
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000208.1:13918-18036:+ gene-Q0065_MUCL30388 rna-Q0065_MUCL30388 cds-NP_009307.2_MUCL30388 99.1 99.8 Unannotated 1 1 0 Unknown False False False False
MUCL39482 GCA_001738235.1 Sake Asia MBVN01000090.1:5742-8938:+ gene-Q0065_MUCL39482 rna-Q0065_MUCL39482 cds-NP_009307.2_MUCL39482 68.2 87.7 Unannotated 1 1 0 Unknown False False False False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000309.1:12713-16831:+ gene-Q0065_MUCL42920 rna-Q0065_MUCL42920 cds-NP_009307.2_MUCL42920 99.1 99.8 Unannotated 1 1 0 Unknown False False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011826.1:13818-21041:+ gene-Q0065_NCIM3186 rna-Q0065_NCIM3186 cds-NP_009307.2_NCIM3186 45.7 46.4 Unannotated 1 1 0 Unknown False False False False
NCYC1407 GCA_001738225.1 Sake Asia MBVM01000021.1:12259-17811:+ gene-Q0065_NCYC1407 rna-Q0065_NCYC1407 cds-NP_009307.2_NCYC1407 69.3 81.2 Unannotated 1 1 0 Unknown False False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994156.1:11349-16982:+ gene-Q0065_PE2H3 rna-Q0065_PE2H3 cds-NP_009307.2_PE2H3 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999888.1:11349-16982:+ gene-Q0065_PE2H4 rna-Q0065_PE2H4 cds-NP_009307.2_PE2H4 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001224.1:13818-21935:+ gene-Q0065_S288C rna-Q0065_S288C cds-NP_009307.2_S288C 100.0 100.0 Unannotated 1 1 0 Unknown False False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000049.1:7033-17076:- gene-Q0065_SA1 rna-Q0065_SA1 cds-NP_009307.2_SA1 84.3 89.9 Unannotated 1 1 0 Unknown False False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia MBWA01000010.1:11760-17561:+ gene-Q0065_ThermosaccDry rna-Q0065_ThermosaccDry cds-NP_009307.2_ThermosaccDry 66.4 86.8 Unannotated 1 1 0 Unknown False False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000293.1:13182-18815:+ gene-Q0065_VR1 rna-Q0065_VR1 cds-NP_009307.2_VR1 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_018044.1:23410-26136:+ gene-Q0065_Sparadoxus rna-Q0065_Sparadoxus cds-NP_009307.2_Sparadoxus 14.1 14.5 Unannotated 1 1 0 Unknown False False False False

Additional files