AI3 (Q0060)

Gene profile

Gene name: AI3
Reference locus (S288C): Q0060
Gene biotype: protein_coding

Description: Intron-encoded DNA endonuclease aI3; Endonuclease I-SceIII; encoded by a mobile group I intron within the mitochondrial COX1 gene

Top 10 interactors (score): COX2 (0.995); COX3 (0.994); COX6 (0.915); COB (0.915); COX12 (0.869); RIP1 (0.868); ATP6 (0.825); QCR2 (0.82); BI2 (0.808); BI4 (0.802); BI3 (0.8); COX4 (0.78); MAS1 (0.76); CYT1 (0.745); QCR9 (0.736); QCR6 (0.732); SCEI (0.731); COX11 (0.719); QCR8 (0.706); COX8 (0.704)

Homologues (species, bitscore): MT-CO1 (Homo sapiens, 94.0); mt-Co1 (Mus musculus, 97.4); COX1 (Danio rerio, 97.4); COX1 (Xenopus tropicalis, 98.6); mt:CoI (Drosophila melanogaster, 96.7); COX1 (Caenorhabditis elegans, 95.9); COX1 (Arabidopsis thaliana, 108.2)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia MBVO01000055.1:13277-14524:+ gene-Q0060_AKU4011 rna-Q0060_AKU4011 cds-NP_009308.2_AKU4011 97.0 97.1 Unannotated 1 1 0 Unknown False False False False
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000033.1:14328-16798:+ gene-Q0060_Bruggeman rna-Q0060_Bruggeman cds-NP_009308.2_Bruggeman 56.6 77.8 Unannotated 1 1 0 Unknown False False False False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000376.1:7819-14026:+ gene-Q0060_CAT1 rna-Q0060_CAT1 cds-NP_009308.2_CAT1 97.5 100.0 Unannotated 1 1 0 Unknown False False False False
CBS1585 GCA_001738375.1 Sake Asia MBVS01000067.1:11521-12768:+ gene-Q0060_CBS1585 rna-Q0060_CBS1585 cds-NP_009308.2_CBS1585 96.7 97.1 Unannotated 1 1 0 Unknown False False False False
CBS436 GCA_001738355.1 Sake Asia MBVR01000053.1:13613-17308:+ gene-Q0060_CBS436 rna-Q0060_CBS436 cds-NP_009308.2_CBS436 99.6 100.0 Unannotated 1 1 0 Unknown False False False False
CBS6412 GCA_001738345.1 Sake Asia MBVQ01000062.1:7219-8527:+ gene-Q0060_CBS6412 rna-Q0060_CBS6412 cds-NP_009308.2_CBS6412 81.9 95.7 Unannotated 1 1 0 Unknown False False False False
CBS6413 GCA_001738265.1 Sake Asia MBVP01000022.1:173-521:- gene-Q0060_CBS6413 rna-Q0060_CBS6413 cds-NP_009308.2_CBS6413 27.4 27.9 Unannotated 1 1 0 Unknown False False False False
EthanolRed GCA_001738615.1 Bioethanol Asia MBWB01000074.1:7651-11444:+ gene-Q0060_EthanolRed rna-Q0060_EthanolRed cds-NP_009308.2_EthanolRed 84.4 98.7 Unannotated 1 1 0 Unknown False False False False
FaliES1 GCA_001738715.1 Bioethanol Asia MBWD01000016.1:13890-17683:+ gene-Q0060_FaliES1 rna-Q0060_FaliES1 cds-NP_009308.2_FaliES1 84.4 98.7 Unannotated 1 1 0 Unknown False False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000029.1:3446-7141:- gene-Q0060_JAY291 rna-Q0060_JAY291 cds-NP_009308.2_JAY291 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000168.1:11838-14490:+ gene-Q0060_MUCL30387 rna-Q0060_MUCL30387 cds-NP_009308.2_MUCL30387 16.1 16.4 Unannotated 1 1 0 Unknown False False False False
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000208.1:13918-16388:+ gene-Q0060_MUCL30388 rna-Q0060_MUCL30388 cds-NP_009308.2_MUCL30388 56.6 77.8 Unannotated 1 1 0 Unknown False False False False
MUCL39482 GCA_001738235.1 Sake Asia MBVN01000090.1:5742-6989:+ gene-Q0060_MUCL39482 rna-Q0060_MUCL39482 cds-NP_009308.2_MUCL39482 96.7 97.1 Unannotated 1 1 0 Unknown False False False False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000309.1:12713-15365:+ gene-Q0060_MUCL42920 rna-Q0060_MUCL42920 cds-NP_009308.2_MUCL42920 16.1 16.4 Unannotated 1 1 0 Unknown False False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011826.1:13818-19045:+ gene-Q0060_NCIM3186 rna-Q0060_NCIM3186 cds-NP_009308.2_NCIM3186 23.3 23.7 Unannotated 1 1 0 Unknown False False False False
NCYC1407 GCA_001738225.1 Sake Asia MBVM01000021.1:12259-15965:+ gene-Q0060_NCYC1407 rna-Q0060_NCYC1407 cds-NP_009308.2_NCYC1407 79.0 91.6 Unannotated 1 1 0 Unknown False False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994156.1:11349-15044:+ gene-Q0060_PE2H3 rna-Q0060_PE2H3 cds-NP_009308.2_PE2H3 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999888.1:11349-15044:+ gene-Q0060_PE2H4 rna-Q0060_PE2H4 cds-NP_009308.2_PE2H4 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001224.1:13818-19996:+ gene-Q0060_S288C rna-Q0060_S288C cds-NP_009308.2_S288C 100.0 100.0 Unannotated 1 1 0 Unknown False False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000049.1:10869-17076:- gene-Q0060_SA1 rna-Q0060_SA1 cds-NP_009308.2_SA1 97.6 100.0 Unannotated 1 1 0 Unknown False False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia MBWA01000010.1:11760-15553:+ gene-Q0060_ThermosaccDry rna-Q0060_ThermosaccDry cds-NP_009308.2_ThermosaccDry 84.4 98.7 Unannotated 1 1 0 Unknown False False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000293.1:13182-16877:+ gene-Q0060_VR1 rna-Q0060_VR1 cds-NP_009308.2_VR1 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_018044.1:23410-27005:+ gene-Q0060_Sparadoxus rna-Q0060_Sparadoxus cds-NP_009308.2_Sparadoxus 57.9 77.4 Unannotated 1 1 0 Unknown False False False False

Additional files