AI2 (Q0055)

Gene profile

Gene name: AI2
Reference locus (S288C): Q0055
Gene biotype: protein_coding

Description: Putative COX1/OXI3 intron 2 protein; Reverse transcriptase required for splicing of the COX1 pre-mRNA; encoded by a mobile group II intron within the mitochondrial COX1 gene

Top 10 interactors (score): BI2 (0.918); AI5_BETA (0.88); MSS116 (0.862); BI3 (0.854); BI4 (0.83); COB (0.789); ATP6 (0.785); COX2 (0.777); Q0255 (0.714); COX3 (0.694); GEP3 (0.67); OLI1 (0.668); YJR115W (0.653); QRI5 (0.619); RAD51 (0.615); AI5_ALPHA (0.612); LYS1 (0.571); MRPL16 (0.554); ADE1 (0.545); MTF1 (0.531)

Homologues (species, bitscore): MT-CO1 (Homo sapiens, 71.2); mt-Co1 (Mus musculus, 75.1); COX1 (Danio rerio, 74.3); COX1 (Xenopus tropicalis, 75.9); mt:CoI (Drosophila melanogaster, 73.2); COX1 (Caenorhabditis elegans, 72.8); MATR (Arabidopsis thaliana, 90.9)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia MBVO01000055.1:13277-13445:+ gene-Q0055_AKU4011 rna-Q0055_AKU4011 cds-NP_009309.1_AKU4011 6.5 6.5 Mismatch 1 1 0 Unknown False False False False
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000033.1:14328-16832:+ gene-Q0055_Bruggeman rna-Q0055_Bruggeman cds-NP_009309.1_Bruggeman 60.6 87.5 Unannotated 1 1 0 Unknown False False False False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000376.1:7819-12831:+ gene-Q0055_CAT1 rna-Q0055_CAT1 cds-NP_009309.1_CAT1 99.8 100.0 Unannotated 1 1 0 Unknown False False False False
CBS1585 GCA_001738375.1 Sake Asia MBVS01000067.1:11521-11689:+ gene-Q0055_CBS1585 rna-Q0055_CBS1585 cds-NP_009309.1_CBS1585 6.5 6.5 Mismatch 1 1 0 Unknown False False False False
CBS436 GCA_001738355.1 Sake Asia MBVR01000053.1:13613-16117:+ gene-Q0055_CBS436 rna-Q0055_CBS436 cds-NP_009309.1_CBS436 60.6 87.4 Unannotated 1 1 0 Unknown False False False False
CBS6412 GCA_001738345.1 Sake Asia MBVQ01000062.1:7219-7387:+ gene-Q0055_CBS6412 rna-Q0055_CBS6412 cds-NP_009309.1_CBS6412 6.5 6.5 Mismatch 1 1 0 Unknown False False False False
CBS6413 GCA_001738265.1 Sake Asia MBVP01000101.1:38864-41368:+ gene-Q0055_CBS6413 rna-Q0055_CBS6413 cds-NP_009309.1_CBS6413 60.4 87.1 Unannotated 1 1 0 Unknown False False False False
EthanolRed GCA_001738615.1 Bioethanol Asia MBWB01000074.1:7651-10215:+ gene-Q0055_EthanolRed rna-Q0055_EthanolRed cds-NP_009309.1_EthanolRed 99.8 100.0 Unannotated 1 1 0 Unknown False False False False
FaliES1 GCA_001738715.1 Bioethanol Asia MBWD01000016.1:13890-16454:+ gene-Q0055_FaliES1 rna-Q0055_FaliES1 cds-NP_009309.1_FaliES1 99.8 100.0 Unannotated 1 1 0 Unknown False False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000029.1:4637-7141:- gene-Q0055_JAY291 rna-Q0055_JAY291 cds-NP_009309.1_JAY291 60.6 87.6 Unannotated 1 1 0 Unknown False False False False
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000168.1:11838-14342:+ gene-Q0055_MUCL30387 rna-Q0055_MUCL30387 cds-NP_009309.1_MUCL30387 60.6 87.5 Unannotated 1 1 0 Unknown False False False False
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000208.1:13918-16422:+ gene-Q0055_MUCL30388 rna-Q0055_MUCL30388 cds-NP_009309.1_MUCL30388 60.6 87.5 Unannotated 1 1 0 Unknown False False False False
MUCL39482 GCA_001738235.1 Sake Asia MBVN01000090.1:5742-5910:+ gene-Q0055_MUCL39482 rna-Q0055_MUCL39482 cds-NP_009309.1_MUCL39482 6.5 6.5 Mismatch 1 1 0 Unknown False False False False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000309.1:12713-15217:+ gene-Q0055_MUCL42920 rna-Q0055_MUCL42920 cds-NP_009309.1_MUCL42920 60.6 87.5 Unannotated 1 1 0 Unknown False False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011826.1:13818-18830:+ gene-Q0055_NCIM3186 rna-Q0055_NCIM3186 cds-NP_009309.1_NCIM3186 99.8 100.0 Unannotated 1 1 0 Unknown False False False False
NCYC1407 GCA_001738225.1 Sake Asia MBVM01000021.1:12259-14763:+ gene-Q0055_NCYC1407 rna-Q0055_NCYC1407 cds-NP_009309.1_NCYC1407 60.6 87.5 Unannotated 1 1 0 Unknown False False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994156.1:11349-13853:+ gene-Q0055_PE2H3 rna-Q0055_PE2H3 cds-NP_009309.1_PE2H3 60.6 87.6 Unannotated 1 1 0 Unknown False False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999888.1:11349-13853:+ gene-Q0055_PE2H4 rna-Q0055_PE2H4 cds-NP_009309.1_PE2H4 60.6 87.6 Unannotated 1 1 0 Unknown False False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001224.1:13818-18830:+ gene-Q0055_S288C rna-Q0055_S288C cds-NP_009309.1_S288C 100.0 100.0 Unannotated 1 1 0 Unknown False False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000049.1:12064-17076:- gene-Q0055_SA1 rna-Q0055_SA1 cds-NP_009309.1_SA1 99.8 100.0 Unannotated 1 1 0 Unknown False False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia MBWA01000010.1:11760-14324:+ gene-Q0055_ThermosaccDry rna-Q0055_ThermosaccDry cds-NP_009309.1_ThermosaccDry 99.8 100.0 Unannotated 1 1 0 Unknown False False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000293.1:13182-15686:+ gene-Q0055_VR1 rna-Q0055_VR1 cds-NP_009309.1_VR1 60.6 87.6 Unannotated 1 1 0 Unknown False False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_018044.1:23410-25974:+ gene-Q0055_Sparadoxus rna-Q0055_Sparadoxus cds-NP_009309.1_Sparadoxus 95.5 99.9 Unannotated 1 1 0 Unknown False False False False

Additional files