AI1 (Q0050)

Gene profile

Gene name: AI1
Reference locus (S288C): Q0050
Gene biotype: protein_coding

Description: Putative COX1/OXI3 intron 1 protein; Reverse transcriptase required for splicing of the COX1 pre-mRNA; encoded by a mobile group II intron within the mitochondrial COX1 gene

Top 10 interactors (score): COB (0.98); BI4 (0.98); COX2 (0.947); BI2 (0.938); COX3 (0.936); BI3 (0.917); AI5_BETA (0.905); COX1 (0.905); QCR2 (0.9); NDI1 (0.9); CYT1 (0.9); QCR8 (0.9); QCR10 (0.9); NDE1 (0.9); RIP1 (0.9); COR1 (0.9); NDE2 (0.9); QCR6 (0.9); QCR9 (0.9); QCR7 (0.9)

Homologues (species, bitscore): MT-CO1 (Homo sapiens, 57.4); mt-Co1 (Mus musculus, 60.8); COX1 (Danio rerio, 60.1); COX1 (Xenopus tropicalis, 61.6); mt:CoI (Drosophila melanogaster, 58.9); COX1 (Caenorhabditis elegans, 60.8); MATR (Arabidopsis thaliana, 87.0)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia MBVO01000055.1:13277-13445:+ gene-Q0050_AKU4011 rna-Q0050_AKU4011 cds-NP_009310.1_AKU4011 6.7 6.7 Mismatch 1 1 0 Unknown False False False False
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000033.1:14328-16832:+ gene-Q0050_Bruggeman rna-Q0050_Bruggeman cds-NP_009310.1_Bruggeman 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000376.1:7819-10323:+ gene-Q0050_CAT1 rna-Q0050_CAT1 cds-NP_009310.1_CAT1 99.8 100.0 Unannotated 1 1 0 Unknown False False False False
CBS1585 GCA_001738375.1 Sake Asia MBVS01000067.1:11521-11689:+ gene-Q0050_CBS1585 rna-Q0050_CBS1585 cds-NP_009310.1_CBS1585 6.6 6.7 Mismatch 1 1 0 Unknown False False False False
CBS436 GCA_001738355.1 Sake Asia MBVR01000053.1:13613-16117:+ gene-Q0050_CBS436 rna-Q0050_CBS436 cds-NP_009310.1_CBS436 99.8 100.0 Unannotated 1 1 0 Unknown False False False False
CBS6412 GCA_001738345.1 Sake Asia MBVQ01000062.1:7219-9134:+ gene-Q0050_CBS6412 rna-Q0050_CBS6412 cds-NP_009310.1_CBS6412 51.6 70.0 Unannotated 1 1 0 Unknown False False False False
CBS6413 GCA_001738265.1 Sake Asia MBVP01000101.1:38864-41368:+ gene-Q0050_CBS6413 rna-Q0050_CBS6413 cds-NP_009310.1_CBS6413 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
EthanolRed GCA_001738615.1 Bioethanol Asia MBWB01000074.1:7651-10165:+ gene-Q0050_EthanolRed rna-Q0050_EthanolRed cds-NP_009310.1_EthanolRed 61.3 90.5 Unannotated 1 1 0 Unknown False False False False
FaliES1 GCA_001738715.1 Bioethanol Asia MBWD01000016.1:13890-16404:+ gene-Q0050_FaliES1 rna-Q0050_FaliES1 cds-NP_009310.1_FaliES1 61.3 90.5 Unannotated 1 1 0 Unknown False False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000029.1:4637-7141:- gene-Q0050_JAY291 rna-Q0050_JAY291 cds-NP_009310.1_JAY291 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000168.1:11838-14342:+ gene-Q0050_MUCL30387 rna-Q0050_MUCL30387 cds-NP_009310.1_MUCL30387 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000208.1:13918-16422:+ gene-Q0050_MUCL30388 rna-Q0050_MUCL30388 cds-NP_009310.1_MUCL30388 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
MUCL39482 GCA_001738235.1 Sake Asia MBVN01000090.1:5742-5910:+ gene-Q0050_MUCL39482 rna-Q0050_MUCL39482 cds-NP_009310.1_MUCL39482 6.6 6.7 Mismatch 1 1 0 Unknown False False False False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000309.1:12713-15217:+ gene-Q0050_MUCL42920 rna-Q0050_MUCL42920 cds-NP_009310.1_MUCL42920 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011826.1:13818-16322:+ gene-Q0050_NCIM3186 rna-Q0050_NCIM3186 cds-NP_009310.1_NCIM3186 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
NCYC1407 GCA_001738225.1 Sake Asia MBVM01000021.1:12259-14763:+ gene-Q0050_NCYC1407 rna-Q0050_NCYC1407 cds-NP_009310.1_NCYC1407 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994156.1:11349-13853:+ gene-Q0050_PE2H3 rna-Q0050_PE2H3 cds-NP_009310.1_PE2H3 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999888.1:11349-13853:+ gene-Q0050_PE2H4 rna-Q0050_PE2H4 cds-NP_009310.1_PE2H4 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001224.1:13818-16322:+ gene-Q0050_S288C rna-Q0050_S288C cds-NP_009310.1_S288C 100.0 100.0 Unannotated 1 1 0 Unknown False False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000049.1:14572-17076:- gene-Q0050_SA1 rna-Q0050_SA1 cds-NP_009310.1_SA1 99.8 100.0 Unannotated 1 1 0 Unknown False False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia MBWA01000010.1:11760-14274:+ gene-Q0050_ThermosaccDry rna-Q0050_ThermosaccDry cds-NP_009310.1_ThermosaccDry 61.3 90.5 Unannotated 1 1 0 Unknown False False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000293.1:13182-15686:+ gene-Q0050_VR1 rna-Q0050_VR1 cds-NP_009310.1_VR1 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_018044.1:23410-25924:+ gene-Q0050_Sparadoxus rna-Q0050_Sparadoxus cds-NP_009310.1_Sparadoxus 61.3 89.5 Unannotated 1 1 0 Unknown False False False False

Additional files