Gene name: AGC1
Reference locus (S288C): YPR021C
Gene biotype: protein_coding
Description: Solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13; Mitochondrial amino acid transporter; acts both as a glutamate uniporter and as an aspartate-glutamate exchanger; involved in nitrogen metabolism and nitrogen compound biosynthesis; human homolog SLC25A13 complements yeast null mutant
Top 10 interactors (score): CYT1 (0.972); COX6 (0.964); ACO1 (0.892); ATP4 (0.703); ACO2 (0.697); AAT1 (0.689); YGR039W (0.678); DAL2 (0.676); ALT2 (0.675); PEX2 (0.669); AGX1 (0.668); ALT1 (0.663); PEX7 (0.659); SPT3 (0.651); FRS1 (0.651); PEX3 (0.645); PTC1 (0.643); LYS4 (0.643); TIM13 (0.619); ITR1 (0.613)
Homologues (species, bitscore): SLC25A13 (Homo sapiens, 316.2); Slc25a12 (Mus musculus, 321.2); slc25a12 (Danio rerio, 323.6); slc25a12 (Xenopus tropicalis, 328.6); aralar1 (Drosophila melanogaster, 330.5); K02F3.2 (Caenorhabditis elegans, 298.9); NDT2 (Arabidopsis thaliana, 155.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:572302-575010:- | gene-YPR021C_AKU4011 | rna-NM_001184118.1_AKU4011 | cds-NP_015346.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:322123-324831:+ | gene-YPR021C_BG1 | rna-NM_001184118.1_BG1 | cds-NP_015346.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:649964-652672:- | gene-YPR021C_Bruggeman | rna-NM_001184118.1_Bruggeman | cds-NP_015346.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:693463-696171:- | gene-YPR021C_CAT1 | rna-NM_001184118.1_CAT1 | cds-NP_015346.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:575988-578696:- | gene-YPR021C_CBS1585 | rna-NM_001184118.1_CBS1585 | cds-NP_015346.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:590360-593068:- | gene-YPR021C_CBS436 | rna-NM_001184118.1_CBS436 | cds-NP_015346.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:579737-582445:- | gene-YPR021C_CBS6412 | rna-NM_001184118.1_CBS6412 | cds-NP_015346.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:572452-575160:- | gene-YPR021C_CBS6413 | rna-NM_001184118.1_CBS6413 | cds-NP_015346.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:600622-603330:- | gene-YPR021C_CENPK1137D | rna-NM_001184118.1_CENPK1137D | cds-NP_015346.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:570235-572943:- | gene-YPR021C_EthanolRed | rna-NM_001184118.1_EthanolRed | cds-NP_015346.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:578037-580745:- | gene-YPR021C_FaliES1 | rna-NM_001184118.1_FaliES1 | cds-NP_015346.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000116.1:46690-49398:+ | gene-YPR021C_JAY291 | rna-NM_001184118.1_JAY291 | cds-NP_015346.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:591184-593892:- | gene-YPR021C_MUCL30387 | rna-NM_001184118.1_MUCL30387 | cds-NP_015346.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:589837-592545:- | gene-YPR021C_MUCL30388 | rna-NM_001184118.1_MUCL30388 | cds-NP_015346.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:569229-571937:- | gene-YPR021C_MUCL39482 | rna-NM_001184118.1_MUCL39482 | cds-NP_015346.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:630562-633270:- | gene-YPR021C_MUCL42920 | rna-NM_001184118.1_MUCL42920 | cds-NP_015346.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:600632-603340:- | gene-YPR021C_NCIM3186 | rna-NM_001184118.1_NCIM3186 | cds-NP_015346.1_NCIM3186 | 95.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:577176-579884:- | gene-YPR021C_NCYC1407 | rna-NM_001184118.1_NCYC1407 | cds-NP_015346.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:583907-586615:- | gene-YPR021C_PE2H3 | rna-NM_001184118.1_PE2H3 | cds-NP_015346.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:583525-586233:- | gene-YPR021C_PE2H4 | rna-NM_001184118.1_PE2H4 | cds-NP_015346.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:600649-603357:- | gene-YPR021C_S288C | rna-NM_001184118.1_S288C | cds-NP_015346.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:96953-99661:+ | gene-YPR021C_SA1 | rna-NM_001184118.1_SA1 | cds-NP_015346.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:577839-580547:- | gene-YPR021C_ThermosaccDry | rna-NM_001184118.1_ThermosaccDry | cds-NP_015346.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:594079-596787:- | gene-YPR021C_VR1 | rna-NM_001184118.1_VR1 | cds-NP_015346.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:577144-579852:- | gene-YPR021C_ZTW1 | rna-NM_001184118.1_ZTW1 | cds-NP_015346.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:577311-580019:- | gene-YPR021C_Sparadoxus | rna-NM_001184118.1_Sparadoxus | cds-NP_015346.1_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |