Gene name: AFR1
Reference locus (S288C): YDR085C
Gene biotype: protein_coding
Description: Protein required for pheromone-induced projection (shmoo) formation; regulates septin architecture during mating; has an RVXF motif that mediates targeting of Glc7p to mating projections; interacts with Cdc12p; AFR1 has a paralog, YER158C, that arose from the whole genome duplication
Top 10 interactors (score): CDC12 (0.961); YER158C (0.926); BNI4 (0.919); ERG11 (0.78); STE2 (0.773); ASG7 (0.692); SST2 (0.616); SEY1 (0.614); FUS2 (0.599); TPS2 (0.589); GLC7 (0.576); FUS1 (0.569); GIS1 (0.564); MDR1 (0.528); GLO3 (0.525); KAR5 (0.499); AKR1 (0.481); SRL3 (0.478); CDC10 (0.473); FMP16 (0.471)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:591847-593709:- | gene-YDR085C_AKU4011 | rna-NM_001180393.1_AKU4011 | cds-NP_010370.1_AKU4011 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:531609-533471:+ | gene-YDR085C_BG1 | rna-NM_001180393.1_BG1 | cds-NP_010370.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:624075-625937:- | gene-YDR085C_Bruggeman | rna-NM_001180393.1_Bruggeman | cds-NP_010370.1_Bruggeman | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:607716-610624:- | gene-YDR085C_CAT1 | rna-NM_001180393.1_CAT1 | cds-NP_010370.1_CAT1 | 63.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:582866-584728:- | gene-YDR085C_CBS1585 | rna-NM_001180393.1_CBS1585 | cds-NP_010370.1_CBS1585 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:607883-609745:- | gene-YDR085C_CBS436 | rna-NM_001180393.1_CBS436 | cds-NP_010370.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:579281-581143:- | gene-YDR085C_CBS6412 | rna-NM_001180393.1_CBS6412 | cds-NP_010370.1_CBS6412 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:607811-609673:- | gene-YDR085C_CBS6413 | rna-NM_001180393.1_CBS6413 | cds-NP_010370.1_CBS6413 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:613333-615195:- | gene-YDR085C_CENPK1137D | rna-NM_001180393.1_CENPK1137D | cds-NP_010370.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:593638-595500:- | gene-YDR085C_EthanolRed | rna-NM_001180393.1_EthanolRed | cds-NP_010370.1_EthanolRed | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:600432-602294:- | gene-YDR085C_FaliES1 | rna-NM_001180393.1_FaliES1 | cds-NP_010370.1_FaliES1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000358.1:28974-30836:+ | gene-YDR085C_JAY291 | rna-NM_001180393.1_JAY291 | cds-NP_010370.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:608692-610554:- | gene-YDR085C_MUCL30387 | rna-NM_001180393.1_MUCL30387 | cds-NP_010370.1_MUCL30387 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:599004-600866:- | gene-YDR085C_MUCL30388 | rna-NM_001180393.1_MUCL30388 | cds-NP_010370.1_MUCL30388 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:584236-586098:- | gene-YDR085C_MUCL39482 | rna-NM_001180393.1_MUCL39482 | cds-NP_010370.1_MUCL39482 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:515688-517550:- | gene-YDR085C_MUCL42920 | rna-NM_001180393.1_MUCL42920 | cds-NP_010370.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:614211-616073:- | gene-YDR085C_NCIM3186 | rna-NM_001180393.1_NCIM3186 | cds-NP_010370.1_NCIM3186 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:583143-585005:- | gene-YDR085C_NCYC1407 | rna-NM_001180393.1_NCYC1407 | cds-NP_010370.1_NCYC1407 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:602613-604475:- | gene-YDR085C_PE2H3 | rna-NM_001180393.1_PE2H3 | cds-NP_010370.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:601918-603780:- | gene-YDR085C_PE2H4 | rna-NM_001180393.1_PE2H4 | cds-NP_010370.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:614288-616150:- | gene-YDR085C_S288C | rna-NM_001180393.1_S288C | cds-NP_010370.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:29184-31046:+ | gene-YDR085C_SA1 | rna-NM_001180393.1_SA1 | cds-NP_010370.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:599962-601824:- | gene-YDR085C_ThermosaccDry | rna-NM_001180393.1_ThermosaccDry | cds-NP_010370.1_ThermosaccDry | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:612513-614375:- | gene-YDR085C_VR1 | rna-NM_001180393.1_VR1 | cds-NP_010370.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:597545-599407:- | gene-YDR085C_ZTW1 | rna-NM_001180393.1_ZTW1 | cds-NP_010370.1_ZTW1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:602248-604110:- | gene-YDR085C_Sparadoxus | rna-NM_001180393.1_Sparadoxus | cds-NP_010370.1_Sparadoxus | 85.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |