Gene name: ACL4
Reference locus (S288C): YDR161W
Gene biotype: protein_coding
Description: Specific assembly chaperone for ribosomal protein Rpl4p; binds to an evolutionarily conserved surface extension of nascent Rpl4p and chaperones Rpl4p until its assembly into the pre-ribosome; transcriptionally co-regulated with rRNA and ribosome biosynthesis genes; Belongs to the ACL4 family
Top 10 interactors (score): NUG1 (0.935); RPF1 (0.932); RPA49 (0.93); ENP2 (0.926); BFR2 (0.923); UTP23 (0.922); ENP1 (0.918); RRB1 (0.917); DBP3 (0.917); YCR087C-A (0.916); NOP2 (0.916); BUD20 (0.916); KRE33 (0.916); SPB1 (0.915); HCA4 (0.913); KRI1 (0.913); RIO2 (0.912); LCP5 (0.912); PUF6 (0.911); LHP1 (0.91)
Homologues (species, bitscore): si:dkey-12j5.1 (Danio rerio, 77.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:750338-751501:+ | gene-YDR161W_AKU4011 | rna-NM_001180468.1_AKU4011 | cds-NP_010445.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:375253-376416:- | gene-YDR161W_BG1 | rna-NM_001180468.1_BG1 | cds-NP_010445.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:781836-782999:+ | gene-YDR161W_Bruggeman | rna-NM_001180468.1_Bruggeman | cds-NP_010445.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:769112-770275:+ | gene-YDR161W_CAT1 | rna-NM_001180468.1_CAT1 | cds-NP_010445.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:740706-741869:+ | gene-YDR161W_CBS1585 | rna-NM_001180468.1_CBS1585 | cds-NP_010445.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:766899-768062:+ | gene-YDR161W_CBS436 | rna-NM_001180468.1_CBS436 | cds-NP_010445.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:736155-737318:+ | gene-YDR161W_CBS6412 | rna-NM_001180468.1_CBS6412 | cds-NP_010445.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:764604-765767:+ | gene-YDR161W_CBS6413 | rna-NM_001180468.1_CBS6413 | cds-NP_010445.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:779705-780868:+ | gene-YDR161W_CENPK1137D | rna-NM_001180468.1_CENPK1137D | cds-NP_010445.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:750165-751328:+ | gene-YDR161W_EthanolRed | rna-NM_001180468.1_EthanolRed | cds-NP_010445.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:758377-759540:+ | gene-YDR161W_FaliES1 | rna-NM_001180468.1_FaliES1 | cds-NP_010445.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000119.1:22722-23885:- | gene-YDR161W_JAY291 | rna-NM_001180468.1_JAY291 | cds-NP_010445.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:767214-768377:+ | gene-YDR161W_MUCL30387 | rna-NM_001180468.1_MUCL30387 | cds-NP_010445.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:755724-756887:+ | gene-YDR161W_MUCL30388 | rna-NM_001180468.1_MUCL30388 | cds-NP_010445.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:742133-743296:+ | gene-YDR161W_MUCL39482 | rna-NM_001180468.1_MUCL39482 | cds-NP_010445.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:679958-681121:+ | gene-YDR161W_MUCL42920 | rna-NM_001180468.1_MUCL42920 | cds-NP_010445.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:778966-780129:+ | gene-YDR161W_NCIM3186 | rna-NM_001180468.1_NCIM3186 | cds-NP_010445.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:741537-742700:+ | gene-YDR161W_NCYC1407 | rna-NM_001180468.1_NCYC1407 | cds-NP_010445.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:760731-761894:+ | gene-YDR161W_PE2H3 | rna-NM_001180468.1_PE2H3 | cds-NP_010445.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:760036-761199:+ | gene-YDR161W_PE2H4 | rna-NM_001180468.1_PE2H4 | cds-NP_010445.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:779043-780206:+ | gene-YDR161W_S288C | rna-NM_001180468.1_S288C | cds-NP_010445.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:126242-127405:+ | gene-YDR161W_SA1 | rna-NM_001180468.1_SA1 | cds-NP_010445.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:756512-757675:+ | gene-YDR161W_ThermosaccDry | rna-NM_001180468.1_ThermosaccDry | cds-NP_010445.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:771500-772663:+ | gene-YDR161W_VR1 | rna-NM_001180468.1_VR1 | cds-NP_010445.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:19264-20426:+ | gene-YDR161W_ZTW1 | rna-NM_001180468.1_ZTW1 | cds-NP_010445.1_ZTW1 | 99.3 | 99.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:762741-763901:+ | gene-YDR161W_Sparadoxus | rna-NM_001180468.1_Sparadoxus | cds-NP_010445.1_Sparadoxus | 89.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |