Gene name: ABP1
Reference locus (S288C): YCR088W
Gene biotype: protein_coding
Description: Actin-binding protein of the cortical actin cytoskeleton; important for activation of the Arp2/3 complex that plays a key role actin in cytoskeleton organization; inhibits barbed-end actin filament elongation; phosphorylation within its Proline-Rich Regio, mediated by Cdc28p and Pho85p, protects Abp1p from proteolysis mediated by its own PEST sequences; mammalian homolog of HIP-55 (hematopoietic progenitor kinase 1 [HPK1]-interacting protein of 55 kDa)
Top 10 interactors (score): ACT1 (0.999); SLA2 (0.999); ARP2 (0.999); PRK1 (0.997); CAP2 (0.997); ARK1 (0.995); SAC6 (0.992); LAS17 (0.99); SRV2 (0.99); SLA1 (0.99); RVS167 (0.989); ARP3 (0.987); PAN1 (0.981); BZZ1 (0.978); EDE1 (0.973); MYO5 (0.97); COF1 (0.968); VRP1 (0.966); SCP1 (0.964); ARC35 (0.962)
Homologues (species, bitscore): DBNL (Homo sapiens, 65.5); Dbnl (Mus musculus, 68.2); dbnlb (Danio rerio, 89.7); hcls1 (Xenopus tropicalis, 64.7); Abp1 (Drosophila melanogaster, 73.2); F42H10.3 (Caenorhabditis elegans, 56.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:259559-261337:+ | gene-YCR088W_AKU4011 | rna-NM_001178794.1_AKU4011 | cds-NP_010012.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:118310-120088:+ | gene-YCR088W_BG1 | rna-NM_001178794.1_BG1 | cds-NP_010012.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:255750-257528:+ | gene-YCR088W_Bruggeman | rna-NM_001178794.1_Bruggeman | cds-NP_010012.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:266815-268593:+ | gene-YCR088W_CAT1 | rna-NM_001178794.1_CAT1 | cds-NP_010012.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:254373-256151:+ | gene-YCR088W_CBS1585 | rna-NM_001178794.1_CBS1585 | cds-NP_010012.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:266147-267925:+ | gene-YCR088W_CBS436 | rna-NM_001178794.1_CBS436 | cds-NP_010012.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:245726-247504:+ | gene-YCR088W_CBS6412 | rna-NM_001178794.1_CBS6412 | cds-NP_010012.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:260424-262202:+ | gene-YCR088W_CBS6413 | rna-NM_001178794.1_CBS6413 | cds-NP_010012.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:264451-266229:+ | gene-YCR088W_CENPK1137D | rna-NM_001178794.1_CENPK1137D | cds-NP_010012.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:255386-257164:+ | gene-YCR088W_EthanolRed | rna-NM_001178794.1_EthanolRed | cds-NP_010012.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:260749-262527:+ | gene-YCR088W_FaliES1 | rna-NM_001178794.1_FaliES1 | cds-NP_010012.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000323.1:26279-28057:- | gene-YCR088W_JAY291 | rna-NM_001178794.1_JAY291 | cds-NP_010012.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:252879-254657:+ | gene-YCR088W_MUCL30387 | rna-NM_001178794.1_MUCL30387 | cds-NP_010012.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:252757-254535:+ | gene-YCR088W_MUCL30388 | rna-NM_001178794.1_MUCL30388 | cds-NP_010012.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:260937-262715:+ | gene-YCR088W_MUCL39482 | rna-NM_001178794.1_MUCL39482 | cds-NP_010012.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:257604-259382:+ | gene-YCR088W_MUCL42920 | rna-NM_001178794.1_MUCL42920 | cds-NP_010012.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:264700-266478:+ | gene-YCR088W_NCIM3186 | rna-NM_001178794.1_NCIM3186 | cds-NP_010012.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:261777-263555:+ | gene-YCR088W_NCYC1407 | rna-NM_001178794.1_NCYC1407 | cds-NP_010012.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:276328-278106:+ | gene-YCR088W_PE2H3 | rna-NM_001178794.1_PE2H3 | cds-NP_010012.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:264880-266658:+ | gene-YCR088W_PE2H4 | rna-NM_001178794.1_PE2H4 | cds-NP_010012.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:265068-266846:+ | gene-YCR088W_S288C | rna-NM_001178794.1_S288C | cds-NP_010012.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:64900-66678:+ | gene-YCR088W_SA1 | rna-NM_001178794.1_SA1 | cds-NP_010012.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:260676-262454:+ | gene-YCR088W_ThermosaccDry | rna-NM_001178794.1_ThermosaccDry | cds-NP_010012.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:271869-273647:+ | gene-YCR088W_VR1 | rna-NM_001178794.1_VR1 | cds-NP_010012.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:258517-260295:+ | gene-YCR088W_ZTW1 | rna-NM_001178794.1_ZTW1 | cds-NP_010012.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:292631-294406:+ | gene-YCR088W_Sparadoxus | rna-NM_001178794.1_Sparadoxus | cds-NP_010012.1_Sparadoxus | 90.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |