Gene name: ABF2
Reference locus (S288C): YMR072W
Gene biotype: protein_coding
Description: ARS-binding factor 2, mitochondrial; Mitochondrial DNA-binding protein; involved in mitochondrial DNA replication and recombination, member of HMG1 DNA-binding protein family; activity may be regulated by protein kinase A phosphorylation; ABF2 has a paralog, IXR1, that arose from the whole genome duplication; human homolog TFAM can complement yeast abf2 mutant, rescuing the loss-of-mitochondrial DNA phenotype in a yeast abf2 strain
Top 10 interactors (score): RPO41 (0.881); NHP6A (0.87); NHP10 (0.845); CCE1 (0.84); HMO1 (0.836); ILV5 (0.834); ACO1 (0.828); MGM101 (0.813); HTA2 (0.796); MHR1 (0.776); ORI5 (0.771); CMR1 (0.761); NHP6B (0.753); HTA1 (0.715); MCX1 (0.713); MMM1 (0.712); CHD1 (0.704); PIF1 (0.699); HTB1 (0.671); SPT16 (0.666)
Homologues (species, bitscore): HMGB3 (Homo sapiens, 58.5); Hmgb3 (Mus musculus, 56.2); ssrp1a (Danio rerio, 59.3); ssrp1 (Xenopus tropicalis, 56.6); HmgZ (Drosophila melanogaster, 52.8); HMGB2 (Arabidopsis thaliana, 59.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:449274-449825:+ | gene-YMR072W_AKU4011 | rna-NM_001182570.1_AKU4011 | cds-NP_013788.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:92959-93510:- | gene-YMR072W_BG1 | rna-NM_001182570.1_BG1 | cds-NP_013788.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:391425-391976:+ | gene-YMR072W_Bruggeman | rna-NM_001182570.1_Bruggeman | cds-NP_013788.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:391788-392339:+ | gene-YMR072W_CAT1 | rna-NM_001182570.1_CAT1 | cds-NP_013788.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:382217-382768:+ | gene-YMR072W_CBS1585 | rna-NM_001182570.1_CBS1585 | cds-NP_013788.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:387770-388321:+ | gene-YMR072W_CBS436 | rna-NM_001182570.1_CBS436 | cds-NP_013788.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:495290-495841:+ | gene-YMR072W_CBS6412 | rna-NM_001182570.1_CBS6412 | cds-NP_013788.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:381474-382025:+ | gene-YMR072W_CBS6413 | rna-NM_001182570.1_CBS6413 | cds-NP_013788.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:405674-406225:+ | gene-YMR072W_CENPK1137D | rna-NM_001182570.1_CENPK1137D | cds-NP_013788.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:382079-382630:+ | gene-YMR072W_EthanolRed | rna-NM_001182570.1_EthanolRed | cds-NP_013788.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:385245-385796:+ | gene-YMR072W_FaliES1 | rna-NM_001182570.1_FaliES1 | cds-NP_013788.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:51160-51711:- | gene-YMR072W_JAY291 | rna-NM_001182570.1_JAY291 | cds-NP_013788.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:387157-387708:+ | gene-YMR072W_MUCL30387 | rna-NM_001182570.1_MUCL30387 | cds-NP_013788.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:391845-392396:+ | gene-YMR072W_MUCL30388 | rna-NM_001182570.1_MUCL30388 | cds-NP_013788.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:382505-383056:+ | gene-YMR072W_MUCL39482 | rna-NM_001182570.1_MUCL39482 | cds-NP_013788.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:389158-389709:+ | gene-YMR072W_MUCL42920 | rna-NM_001182570.1_MUCL42920 | cds-NP_013788.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:411523-412074:+ | gene-YMR072W_NCIM3186 | rna-NM_001182570.1_NCIM3186 | cds-NP_013788.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:382417-382968:+ | gene-YMR072W_NCYC1407 | rna-NM_001182570.1_NCYC1407 | cds-NP_013788.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:388368-388919:+ | gene-YMR072W_PE2H3 | rna-NM_001182570.1_PE2H3 | cds-NP_013788.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:394463-395014:+ | gene-YMR072W_PE2H4 | rna-NM_001182570.1_PE2H4 | cds-NP_013788.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:411569-412120:+ | gene-YMR072W_S288C | rna-NM_001182570.1_S288C | cds-NP_013788.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:138050-138601:- | gene-YMR072W_SA1 | rna-NM_001182570.1_SA1 | cds-NP_013788.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:383048-383599:+ | gene-YMR072W_ThermosaccDry | rna-NM_001182570.1_ThermosaccDry | cds-NP_013788.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:394952-395503:+ | gene-YMR072W_VR1 | rna-NM_001182570.1_VR1 | cds-NP_013788.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:361322-361873:+ | gene-YMR072W_ZTW1 | rna-NM_001182570.1_ZTW1 | cds-NP_013788.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:394884-395436:+ | gene-YMR072W_Sparadoxus | rna-NM_001182570.1_Sparadoxus | cds-NP_013788.1_Sparadoxus | 89.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |