Gene name: ABF1
Reference locus (S288C): YKL112W
Gene biotype: protein_coding
Description: ARS-binding factor 1; DNA binding protein with possible chromatin-reorganizing activity; involved in transcriptional activation, gene silencing, and DNA replication and repair; Belongs to the BAF1 family
Top 10 interactors (score): RAD7 (0.976); RAD16 (0.974); RAP1 (0.968); IFH1 (0.96); FHL1 (0.96); REB1 (0.948); SSL2 (0.925); RAD4 (0.924); RAD23 (0.917); RAD2 (0.913); SSL1 (0.912); TBF1 (0.907); RAD3 (0.904); TFB1 (0.901); CSM2 (0.9); PSY3 (0.9); SHU1 (0.9); SHU2 (0.9); CBF1 (0.776); SIR4 (0.768)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:213138-215333:+ | gene-YKL112W_AKU4011 | rna-NM_001179678.1_AKU4011 | cds-NP_012810.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:190262-192457:+ | gene-YKL112W_BG1 | rna-NM_001179678.1_BG1 | cds-NP_012810.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:231062-233257:+ | gene-YKL112W_Bruggeman | rna-NM_001179678.1_Bruggeman | cds-NP_012810.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:226108-228303:+ | gene-YKL112W_CAT1 | rna-NM_001179678.1_CAT1 | cds-NP_012810.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:225369-227564:+ | gene-YKL112W_CBS1585 | rna-NM_001179678.1_CBS1585 | cds-NP_012810.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:223958-226153:+ | gene-YKL112W_CBS436 | rna-NM_001179678.1_CBS436 | cds-NP_012810.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:210000-212195:+ | gene-YKL112W_CBS6412 | rna-NM_001179678.1_CBS6412 | cds-NP_012810.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:225834-228029:+ | gene-YKL112W_CBS6413 | rna-NM_001179678.1_CBS6413 | cds-NP_012810.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:226212-228407:+ | gene-YKL112W_CENPK1137D | rna-NM_001179678.1_CENPK1137D | cds-NP_012810.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:223815-226010:+ | gene-YKL112W_EthanolRed | rna-NM_001179678.1_EthanolRed | cds-NP_012810.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:224628-226823:+ | gene-YKL112W_FaliES1 | rna-NM_001179678.1_FaliES1 | cds-NP_012810.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000357.1:46976-49171:+ | gene-YKL112W_JAY291 | rna-NM_001179678.1_JAY291 | cds-NP_012810.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:232865-235060:+ | gene-YKL112W_MUCL30387 | rna-NM_001179678.1_MUCL30387 | cds-NP_012810.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:227244-229439:+ | gene-YKL112W_MUCL30388 | rna-NM_001179678.1_MUCL30388 | cds-NP_012810.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:225165-227360:+ | gene-YKL112W_MUCL39482 | rna-NM_001179678.1_MUCL39482 | cds-NP_012810.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:229540-231735:+ | gene-YKL112W_MUCL42920 | rna-NM_001179678.1_MUCL42920 | cds-NP_012810.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:226559-228754:+ | gene-YKL112W_NCIM3186 | rna-NM_001179678.1_NCIM3186 | cds-NP_012810.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:225355-227550:+ | gene-YKL112W_NCYC1407 | rna-NM_001179678.1_NCYC1407 | cds-NP_012810.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:232448-234643:+ | gene-YKL112W_PE2H3 | rna-NM_001179678.1_PE2H3 | cds-NP_012810.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:228737-230932:+ | gene-YKL112W_PE2H4 | rna-NM_001179678.1_PE2H4 | cds-NP_012810.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:226570-228765:+ | gene-YKL112W_S288C | rna-NM_001179678.1_S288C | cds-NP_012810.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:142687-144891:+ | gene-YKL112W_SA1 | rna-NM_001179678.1_SA1 | cds-NP_012810.1_SA1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:225328-227523:+ | gene-YKL112W_ThermosaccDry | rna-NM_001179678.1_ThermosaccDry | cds-NP_012810.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:224699-226903:+ | gene-YKL112W_VR1 | rna-NM_001179678.1_VR1 | cds-NP_012810.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:223902-226097:+ | gene-YKL112W_ZTW1 | rna-NM_001179678.1_ZTW1 | cds-NP_012810.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:240871-243066:+ | gene-YKL112W_Sparadoxus | rna-NM_001179678.1_Sparadoxus | cds-NP_012810.1_Sparadoxus | 89.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |