Gene name: ABD1
Reference locus (S288C): YBR236C
Gene biotype: protein_coding
Description: mRNA cap guanine-N7 methyltransferase; Methyltransferase; catalyzes the transfer of a methyl group from S-adenosylmethionine to the GpppN terminus of capped mRNA; nuclear protein that relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): CEG1 (0.999); CET1 (0.993); SPT5 (0.987); HCM1 (0.96); KIN28 (0.924); RPO21 (0.905); CBC2 (0.904); RPB7 (0.864); STO1 (0.861); RPB2 (0.856); SGV1 (0.856); SPT4 (0.775); THG1 (0.758); CCL1 (0.749); RPB8 (0.742); RAI1 (0.719); DXO1 (0.712); GAL11 (0.693); TRM82 (0.683); TGS1 (0.669)
Homologues (species, bitscore): RNMT (Homo sapiens, 147.9); Rnmt (Mus musculus, 146.7); rnmt (Danio rerio, 146.7); rnmt (Xenopus tropicalis, 141.0); l(2)35Bd (Drosophila melanogaster, 134.4); tag-72 (Caenorhabditis elegans, 134.8); AT3G20650 (Arabidopsis thaliana, 195.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:674690-676000:- | gene-YBR236C_AKU4011 | rna-NM_001178584.3_AKU4011 | cds-NP_009795.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:45653-46963:- | gene-YBR236C_BG1 | rna-NM_001178584.3_BG1 | cds-NP_009795.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:675845-677155:- | gene-YBR236C_Bruggeman | rna-NM_001178584.3_Bruggeman | cds-NP_009795.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:679051-680361:- | gene-YBR236C_CAT1 | rna-NM_001178584.3_CAT1 | cds-NP_009795.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:666222-667532:- | gene-YBR236C_CBS1585 | rna-NM_001178584.3_CBS1585 | cds-NP_009795.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:672647-673957:- | gene-YBR236C_CBS436 | rna-NM_001178584.3_CBS436 | cds-NP_009795.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:761202-762512:- | gene-YBR236C_CBS6412 | rna-NM_001178584.3_CBS6412 | cds-NP_009795.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:672265-673575:- | gene-YBR236C_CBS6413 | rna-NM_001178584.3_CBS6413 | cds-NP_009795.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:684160-685470:- | gene-YBR236C_CENPK1137D | rna-NM_001178584.3_CENPK1137D | cds-NP_009795.3_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:797931-799241:- | gene-YBR236C_EthanolRed | rna-NM_001178584.3_EthanolRed | cds-NP_009795.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:691038-692348:- | gene-YBR236C_FaliES1 | rna-NM_001178584.3_FaliES1 | cds-NP_009795.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:110002-111312:+ | gene-YBR236C_JAY291 | rna-NM_001178584.3_JAY291 | cds-NP_009795.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:677861-679171:- | gene-YBR236C_MUCL30387 | rna-NM_001178584.3_MUCL30387 | cds-NP_009795.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:694940-696250:- | gene-YBR236C_MUCL30388 | rna-NM_001178584.3_MUCL30388 | cds-NP_009795.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:664574-665884:- | gene-YBR236C_MUCL39482 | rna-NM_001178584.3_MUCL39482 | cds-NP_009795.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:674423-675733:- | gene-YBR236C_MUCL42920 | rna-NM_001178584.3_MUCL42920 | cds-NP_009795.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:690180-691490:- | gene-YBR236C_NCIM3186 | rna-NM_001178584.3_NCIM3186 | cds-NP_009795.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:666437-667747:- | gene-YBR236C_NCYC1407 | rna-NM_001178584.3_NCYC1407 | cds-NP_009795.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:689553-690863:- | gene-YBR236C_PE2H3 | rna-NM_001178584.3_PE2H3 | cds-NP_009795.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:687229-688539:- | gene-YBR236C_PE2H4 | rna-NM_001178584.3_PE2H4 | cds-NP_009795.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:690383-691693:- | gene-YBR236C_S288C | rna-NM_001178584.3_S288C | cds-NP_009795.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:45510-46820:- | gene-YBR236C_SA1 | rna-NM_001178584.3_SA1 | cds-NP_009795.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:690048-691358:- | gene-YBR236C_ThermosaccDry | rna-NM_001178584.3_ThermosaccDry | cds-NP_009795.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:670227-671537:- | gene-YBR236C_VR1 | rna-NM_001178584.3_VR1 | cds-NP_009795.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:662911-664221:- | gene-YBR236C_ZTW1 | rna-NM_001178584.3_ZTW1 | cds-NP_009795.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:706900-708210:- | gene-YBR236C_Sparadoxus | rna-NM_001178584.3_Sparadoxus | cds-NP_009795.3_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |