AAT2 (YLR027C)


Gene profile

Gene name: AAT2
Reference locus (S288C): YLR027C
Gene biotype: protein_coding

Description: Aspartate aminotransferase, cytoplasmic; Cytosolic aspartate aminotransferase involved in nitrogen metabolism; localizes to peroxisomes in oleate-grown cells; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family

Top 10 interactors (score): URA2 (0.987); GDH2 (0.975); YJL068C (0.973); GDH3 (0.969); PYC1 (0.969); CYS3 (0.969); MCY1 (0.967); GDH1 (0.964); MDH1 (0.963); ARO8 (0.963); MDH2 (0.961); SWD2 (0.96); MDH3 (0.959); PYC2 (0.957); STR3 (0.954); PUT2 (0.952); ASN2 (0.949); ASP3-1 (0.949); ARO9 (0.945); PHA2 (0.944)

Homologues (species, bitscore): GOT1 (Homo sapiens, 369.8); Got1 (Mus musculus, 374.4); got2b (Danio rerio, 360.5); got2 (Xenopus tropicalis, 349.0); Got1 (Drosophila melanogaster, 400.6); got-2.1 (Caenorhabditis elegans, 386.7); ASP1 (Arabidopsis thaliana, 352.8)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005306.1:184762-186018:- gene-YLR027C_AKU4011 rna-NM_001181914.1_AKU4011 cds-NP_013127.2_AKU4011 99.6 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000212.1:148033-149289:- gene-YLR027C_BG1 rna-NM_001181914.1_BG1 cds-NP_013127.2_BG1 99.6 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005514.1:195153-196409:- gene-YLR027C_Bruggeman rna-NM_001181914.1_Bruggeman cds-NP_013127.2_Bruggeman 99.6 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005530.1:195480-196736:- gene-YLR027C_CAT1 rna-NM_001181914.1_CAT1 cds-NP_013127.2_CAT1 99.4 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005370.1:192388-193644:- gene-YLR027C_CBS1585 rna-NM_001181914.1_CBS1585 cds-NP_013127.2_CBS1585 99.6 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005354.1:183019-184275:- gene-YLR027C_CBS436 rna-NM_001181914.1_CBS436 cds-NP_013127.2_CBS436 99.6 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:190798-192054:- gene-YLR027C_CBS6412 rna-NM_001181914.1_CBS6412 cds-NP_013127.2_CBS6412 99.6 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005322.1:192650-193906:- gene-YLR027C_CBS6413 rna-NM_001181914.1_CBS6413 cds-NP_013127.2_CBS6413 99.6 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001533.1:182070-183326:- gene-YLR027C_CENPK1137D rna-NM_001181914.1_CENPK1137D cds-NP_013127.2_CENPK1137D 99.6 100.0 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005482.1:184773-186029:- gene-YLR027C_EthanolRed rna-NM_001181914.1_EthanolRed cds-NP_013127.2_EthanolRed 99.6 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005546.1:184345-185601:- gene-YLR027C_FaliES1 rna-NM_001181914.1_FaliES1 cds-NP_013127.2_FaliES1 99.6 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000431.1:28537-29793:- gene-YLR027C_JAY291 rna-NM_001181914.1_JAY291 cds-NP_013127.2_JAY291 99.3 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005418.1:192508-193764:- gene-YLR027C_MUCL30387 rna-NM_001181914.1_MUCL30387 cds-NP_013127.2_MUCL30387 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005450.1:199130-200386:- gene-YLR027C_MUCL30388 rna-NM_001181914.1_MUCL30388 cds-NP_013127.2_MUCL30388 99.6 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005290.1:192883-194139:- gene-YLR027C_MUCL39482 rna-NM_001181914.1_MUCL39482 cds-NP_013127.2_MUCL39482 99.6 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005434.1:192784-194040:- gene-YLR027C_MUCL42920 rna-NM_001181914.1_MUCL42920 cds-NP_013127.2_MUCL42920 99.6 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011821.1:196803-198059:- gene-YLR027C_NCIM3186 rna-NM_001181914.1_NCIM3186 cds-NP_013127.2_NCIM3186 99.3 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005274.1:184500-185756:- gene-YLR027C_NCYC1407 rna-NM_001181914.1_NCYC1407 cds-NP_013127.2_NCYC1407 99.6 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994151.1:190817-192073:- gene-YLR027C_PE2H3 rna-NM_001181914.1_PE2H3 cds-NP_013127.2_PE2H3 99.4 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999883.1:190558-191814:- gene-YLR027C_PE2H4 rna-NM_001181914.1_PE2H4 cds-NP_013127.2_PE2H4 99.4 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001144.5:196829-198085:- gene-YLR027C_S288C rna-NM_001181914.1_S288C cds-NP_013127.2_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000046.1:28674-29930:- gene-YLR027C_SA1 rna-NM_001181914.1_SA1 cds-NP_013127.2_SA1 99.3 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005498.1:184849-186105:- gene-YLR027C_ThermosaccDry rna-NM_001181914.1_ThermosaccDry cds-NP_013127.2_ThermosaccDry 99.6 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005466.1:198266-199522:- gene-YLR027C_VR1 rna-NM_001181914.1_VR1 cds-NP_013127.2_VR1 99.4 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000023.1:184212-185468:- gene-YLR027C_ZTW1 rna-NM_001181914.1_ZTW1 cds-NP_013127.2_ZTW1 99.4 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047498.1:192977-194233:- gene-YLR027C_Sparadoxus rna-NM_001181914.1_Sparadoxus cds-NP_013127.2_Sparadoxus 91.0 100.0 Verified 1 1 1 False True False False False

Additional files