Gene name: AAR2
Reference locus (S288C): YBL074C
Gene biotype: protein_coding
Description: A1 cistron-splicing factor AAR2; Component of the U5 snRNP complex; required for splicing of U3 precursors; originally described as a splicing factor specifically required for splicing pre-mRNA of the MATa1 cistron; Belongs to the AAR2 family
Top 10 interactors (score): PRP8 (0.999); BRR2 (0.999); SNU114 (0.999); LIN1 (0.997); DIB1 (0.993); SMB1 (0.992); PRP28 (0.99); SMD3 (0.972); RRI1 (0.96); SNU66 (0.96); SMD1 (0.954); SME1 (0.949); SMD2 (0.945); PRP18 (0.938); SMX2 (0.938); SMX3 (0.937); PRP6 (0.928); BUD13 (0.882); PRP31 (0.857); SNU13 (0.854)
Homologues (species, bitscore): AAR2 (Homo sapiens, 58.5); Aar2 (Mus musculus, 50.1); aar2 (Danio rerio, 50.8); AT1G66510 (Arabidopsis thaliana, 63.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:80279-81346:- | gene-YBL074C_AKU4011 | rna-NM_001178314.1_AKU4011 | cds-NP_009479.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:71166-72233:- | gene-YBL074C_BG1 | rna-NM_001178314.1_BG1 | cds-NP_009479.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:80891-81958:- | gene-YBL074C_Bruggeman | rna-NM_001178314.1_Bruggeman | cds-NP_009479.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:83090-84157:- | gene-YBL074C_CAT1 | rna-NM_001178314.1_CAT1 | cds-NP_009479.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:72378-73445:- | gene-YBL074C_CBS1585 | rna-NM_001178314.1_CBS1585 | cds-NP_009479.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:81131-82198:- | gene-YBL074C_CBS436 | rna-NM_001178314.1_CBS436 | cds-NP_009479.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:71771-72838:- | gene-YBL074C_CBS6412 | rna-NM_001178314.1_CBS6412 | cds-NP_009479.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:78426-79493:- | gene-YBL074C_CBS6413 | rna-NM_001178314.1_CBS6413 | cds-NP_009479.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:80375-81442:- | gene-YBL074C_CENPK1137D | rna-NM_001178314.1_CENPK1137D | cds-NP_009479.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:94531-95598:- | gene-YBL074C_EthanolRed | rna-NM_001178314.1_EthanolRed | cds-NP_009479.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:94660-95727:- | gene-YBL074C_FaliES1 | rna-NM_001178314.1_FaliES1 | cds-NP_009479.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000019.1:26539-27606:- | gene-YBL074C_JAY291 | rna-NM_001178314.1_JAY291 | cds-NP_009479.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:80019-81086:- | gene-YBL074C_MUCL30387 | rna-NM_001178314.1_MUCL30387 | cds-NP_009479.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:81546-82613:- | gene-YBL074C_MUCL30388 | rna-NM_001178314.1_MUCL30388 | cds-NP_009479.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:72559-73626:- | gene-YBL074C_MUCL39482 | rna-NM_001178314.1_MUCL39482 | cds-NP_009479.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:79391-80458:- | gene-YBL074C_MUCL42920 | rna-NM_001178314.1_MUCL42920 | cds-NP_009479.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:86519-87586:- | gene-YBL074C_NCIM3186 | rna-NM_001178314.1_NCIM3186 | cds-NP_009479.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:74169-75236:- | gene-YBL074C_NCYC1407 | rna-NM_001178314.1_NCYC1407 | cds-NP_009479.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:80455-81522:- | gene-YBL074C_PE2H3 | rna-NM_001178314.1_PE2H3 | cds-NP_009479.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:78099-79166:- | gene-YBL074C_PE2H4 | rna-NM_001178314.1_PE2H4 | cds-NP_009479.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:86722-87789:- | gene-YBL074C_S288C | rna-NM_001178314.1_S288C | cds-NP_009479.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:70832-71899:- | gene-YBL074C_SA1 | rna-NM_001178314.1_SA1 | cds-NP_009479.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:94621-95688:- | gene-YBL074C_ThermosaccDry | rna-NM_001178314.1_ThermosaccDry | cds-NP_009479.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:76789-77856:- | gene-YBL074C_VR1 | rna-NM_001178314.1_VR1 | cds-NP_009479.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:71839-72906:- | gene-YBL074C_ZTW1 | rna-NM_001178314.1_ZTW1 | cds-NP_009479.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:106545-107615:- | gene-YBL074C_Sparadoxus | rna-NM_001178314.1_Sparadoxus | cds-NP_009479.1_Sparadoxus | 86.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |